Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata4

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

age
unknown
sample type
tissue
tissue
liver
sex
not collected
health state
healthy
dev stage
adult
donor ID
ENCDO221RVN
lab
Ross Hardison, PennState
source
Gerd Blobel

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/f9af0ef6-16a4-42a0-9bd0-4c956c4f19fb/@@download/attachment/TruSeq_ChIP_SamplePrep_Guide_15023092_A.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
47628890
Reads aligned (%)
93.3
Duplicates removed (%)
23.8
Number of peaks
21168 (qval < 1E-05)

mm9

Number of total reads
47628890
Reads aligned (%)
93.0
Duplicates removed (%)
23.7
Number of peaks
21169 (qval < 1E-05)

Base call quality data from DBCLS SRA